STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4858PFAM: Carbohydrate-binding family V/XII; chitin-binding domain 3 protein; KEGG: stp:Strop_2456 chitin-binding, domain 3 protein. (266 aa)    
Predicted Functional Partners:
Sare_3485
Chitinase; KEGG: stp:Strop_3258 glycoside hydrolase, family 18; PFAM: glycoside hydrolase family 18; cellulose-binding family II; SMART: chitinase II; Belongs to the glycosyl hydrolase 18 family.
   
 0.782
Sare_3186
PFAM: glycoside hydrolase family 18; cellulose-binding family II; SMART: chitinase II; KEGG: stp:Strop_2965 cellulose-binding, family II; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.731
Sare_0075
PFAM: peptidase M4 thermolysin; Proprotein convertase P; peptidase M20; peptidase M28; Peptidase M4 thermolysin; KEGG: sco:SCO1226 bifunctional protein.
  
  
 0.706
Sare_4859
PFAM: protein of unknown function DUF305; KEGG: stp:Strop_2457 protein of unknown function DUF305.
 
     0.692
Sare_4857
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_2455 histidine kinase, HAMP region domain protein.
 
     0.535
Sare_2420
PFAM: Erythromycin esterase; KEGG: stp:Strop_2296 erythromycin esterase.
  
     0.518
Sare_2253
PFAM: LVIVD repeat protein; KEGG: stp:Strop_2110 LVIVD repeat protein.
  
     0.515
Sare_2125
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sen:SACE_3582 hypothetical protein.
  
     0.508
Sare_1931
KEGG: stp:Strop_0067 hypothetical protein.
  
     0.474
Sare_1786
PFAM: protein of unknown function DUF397; KEGG: stp:Strop_4463 protein of unknown function DUF397.
  
     0.470
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.