STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4870KEGG: stp:Strop_4379 hypothetical protein. (173 aa)    
Predicted Functional Partners:
Sare_4871
PFAM: protein of unknown function DUF1023; KEGG: stp:Strop_4380 protein of unknown function DUF1023.
       0.781
Sare_4872
KEGG: stp:Strop_4381 hypothetical protein.
       0.779
Sare_4873
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: stp:Strop_4382 regulatory protein, MerR.
       0.517
Sare_4874
PFAM: ABC-2 type transporter; KEGG: stp:Strop_4383 ABC-2 type transporter.
       0.496
Sare_4875
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_4384 ABC transporter related.
       0.496
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.