STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4873Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: stp:Strop_4382 regulatory protein, MerR. (260 aa)    
Predicted Functional Partners:
Sare_4874
PFAM: ABC-2 type transporter; KEGG: stp:Strop_4383 ABC-2 type transporter.
 
     0.827
Sare_4875
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_4384 ABC transporter related.
 
     0.823
Sare_1630
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: stp:Strop_1645 regulatory protein, MerR.
  
     0.605
Sare_4876
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
       0.535
Sare_4877
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
       0.535
Sare_4871
PFAM: protein of unknown function DUF1023; KEGG: stp:Strop_4380 protein of unknown function DUF1023.
       0.520
Sare_4872
KEGG: stp:Strop_4381 hypothetical protein.
       0.520
Sare_4870
KEGG: stp:Strop_4379 hypothetical protein.
       0.517
Sare_3555
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: stp:Strop_3322 regulatory protein, MerR.
  
     0.412
Sare_2141
KEGG: rha:RHA1_ro00624 hypothetical protein.
  
     0.406
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.