STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4885PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_4410 ABC transporter related. (626 aa)    
Predicted Functional Partners:
Sare_2595
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: stp:Strop_2440 siderophore-interacting protein.
  
   0.766
Sare_2762
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: stp:Strop_2566 FAD-binding 9, siderophore-interacting domain protein.
   
   0.730
Sare_3804
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: stp:Strop_3427 siderophore-interacting protein.
   
   0.730
Sare_0218
KEGG: ade:Adeh_3412 secretion protein HlyD.
  
 
 0.725
Sare_0410
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: kra:Krad_1868 efflux transporter, RND family, MFP subunit.
  
 
 0.725
Sare_4884
PFAM: peptidase S45 penicillin amidase; KEGG: stp:Strop_4404 peptidase S45, penicillin amidase.
 
     0.603
Sare_0784
TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: stp:Strop_0841 tRNA synthetase, class II (G, H, P and S).
  
     0.476
Sare_1825
PFAM: lipopolysaccharide biosynthesis protein; KEGG: stp:Strop_1834 lipopolysaccharide biosynthesis protein.
 
   
 0.466
Sare_2447
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sen:SACE_4615 putative ATP-binding component of an ABC transport protein.
 
 
  
0.454
Sare_1826
KEGG: stp:Strop_1835 hypothetical protein.
  
    0.447
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.