STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4887PFAM: coagulation factor 5/8 type domain protein; KEGG: stp:Strop_4412 coagulation factor 5/8 type domain protein. (581 aa)    
Predicted Functional Partners:
Sare_1669
KEGG: kra:Krad_3740 secreted protein.
   
 0.891
Sare_4850
PFAM: PfkB domain protein; KEGG: sma:SAV3689 putative 6-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.806
Sare_2410
PFAM: glycoside hydrolase family 5; cellulose-binding family II; KEGG: stp:Strop_2285 glycoside hydrolase, family 5.
  
 0.704
Sare_3180
PFAM: glycoside hydrolase family 48; PKD domain containing protein; cellulose-binding family II; KEGG: stp:Strop_2957 glycoside hydrolase, family 48.
 
  
 0.680
Sare_0964
PFAM: Ricin B lectin; KEGG: stp:Strop_1075 ricin B lectin.
 
   
 0.676
Sare_4899
PFAM: Ricin B lectin; glycoside hydrolase family 12; KEGG: stp:Strop_4424 glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
  
 0.656
Sare_3983
PFAM: glycoside hydrolase family 6; cellulose-binding family II; KEGG: stp:Strop_3602 glycoside hydrolase, family 6; Belongs to the glycosyl hydrolase family 6.
 
  
 0.599
Sare_2407
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sde:Sde_3725 polyketide synthase modules and related proteins-like.
  
  
 0.587
Sare_4888
Methyltransferase type 12; PFAM: O-methyltransferase family 2; Methyltransferase type 12; KEGG: stp:Strop_4414 methyltransferase type 12.
     
 0.586
Sare_4890
TIGRFAM: amino acid adenylation domain; thioester reductase domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; Male sterility domain; KEGG: stp:Strop_4416 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.585
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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