STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4908Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_0840 helix-turn-helix domain protein. (402 aa)    
Predicted Functional Partners:
Sare_0394
PFAM: protein of unknown function DUF1503; KEGG: stp:Strop_0327 protein of unknown function DUF1503.
   
 
 0.758
Sare_2923
KEGG: stp:Strop_1717 hypothetical protein.
  
     0.737
Sare_3280
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3054 lantibiotic dehydratase domain protein.
  
    0.709
Sare_1547
KEGG: stp:Strop_1587 helix-turn-helix domain protein.
  
     0.699
Sare_3349
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: stp:Strop_3119 peptidase S1 and S6, chymotrypsin/Hap.
  
     0.697
Sare_3017
PFAM: A-factor biosynthesis repeat-containing protein; KEGG: stp:Strop_4151 hypothetical protein.
  
     0.677
Sare_3272
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3046 lantibiotic dehydratase domain protein.
  
    0.671
Sare_3343
PFAM: protein of unknown function DUF312; KEGG: stp:Strop_3116 protein of unknown function DUF312.
  
     0.669
Sare_2214
KEGG: stp:Strop_2071 hypothetical protein.
  
     0.668
Sare_3271
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3045 lantibiotic dehydratase domain protein.
  
    0.668
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.