STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4925PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: sen:SACE_2604 transposase, ISlxx1. (262 aa)    
Predicted Functional Partners:
Sare_4926
PFAM: Integrase catalytic region; Resolvase helix-turn-helix domain protein; KEGG: sen:SACE_2605 IS21 family transposase.
 
  
 0.943
Sare_1024
PFAM: Integrase catalytic region; Resolvase helix-turn-helix domain protein; KEGG: sen:SACE_2605 IS21 family transposase.
 
  
 0.760
Sare_1591
PFAM: Integrase catalytic region; Resolvase helix-turn-helix domain protein; KEGG: sen:SACE_2605 IS21 family transposase.
 
  
 0.760
Sare_1968
PFAM: Integrase catalytic region; Resolvase helix-turn-helix domain protein; KEGG: sen:SACE_2605 IS21 family transposase.
 
  
 0.760
Sare_2854
PFAM: Integrase catalytic region; Resolvase helix-turn-helix domain protein; KEGG: sen:SACE_2605 IS21 family transposase.
 
  
 0.760
Sare_3160
PFAM: Integrase catalytic region; Resolvase helix-turn-helix domain protein; KEGG: sen:SACE_2605 IS21 family transposase.
 
  
 0.760
Sare_2580
PFAM: Integrase catalytic region; KEGG: sen:SACE_6452 IS21 family transposase.
 
  
 0.751
Sare_5064
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.516
Sare_1924
KEGG: pna:Pnap_0963 hypothetical protein.
  
 
 0.491
Sare_4924
Hypothetical protein.
       0.437
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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