STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4927Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: stp:Strop_4437 regulatory protein, MerR. (314 aa)    
Predicted Functional Partners:
Sare_4929
TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: stp:Strop_4439 phytoene dehydrogenase-related protein.
 
     0.819
idi-2
Isopentenyl-diphosphate delta-isomerase, type 1; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
       0.792
Sare_4930
PFAM: Polyprenyl synthetase; KEGG: stp:Strop_4440 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
     
 0.767
Sare_4931
PFAM: Squalene/phytoene synthase; KEGG: stp:Strop_4441 squalene/phytoene synthase.
 
   
 0.670
Sare_4831
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.536
Sare_0934
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.498
Sare_4829
KEGG: sen:SACE_5483 hypothetical protein.
 
 
 0.477
Sare_1767
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_1780 LPXTG-motif cell wall anchor domain.
  
 
   0.457
Sare_3842
KEGG: stp:Strop_3463 hypothetical protein.
  
     0.445
Sare_4840
KEGG: sen:SACE_5459 hypothetical protein.
  
     0.444
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.