STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4931PFAM: Squalene/phytoene synthase; KEGG: stp:Strop_4441 squalene/phytoene synthase. (303 aa)    
Predicted Functional Partners:
Sare_4929
TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: stp:Strop_4439 phytoene dehydrogenase-related protein.
 
 0.997
Sare_3478
PFAM: Polyprenyl synthetase; KEGG: stp:Strop_3251 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.968
Sare_4930
PFAM: Polyprenyl synthetase; KEGG: stp:Strop_4440 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.967
Sare_4449
PFAM: Polyprenyl synthetase; KEGG: stp:Strop_4051 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.942
Sare_3475
TIGRFAM: Zeta-phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: stp:Strop_3248 phytoene dehydrogenase-related protein.
  
 0.929
Sare_1053
All-trans-retinol 13,14-reductase; PFAM: Rab GTPase activator; FAD dependent oxidoreductase; KEGG: nfa:nfa30910 hypothetical protein.
 
  
 0.888
Sare_1069
PFAM: FAD dependent oxidoreductase; KEGG: nfa:nfa30910 hypothetical protein.
 
  
 0.885
Sare_1278
PFAM: FAD dependent oxidoreductase; KEGG: stp:Strop_1331 FAD dependent oxidoreductase.
 
  
 0.857
Sare_2408
PFAM: FAD dependent oxidoreductase; KEGG: sde:Sde_3726 phytoene dehydrogenase and related proteins-like.
 
  
 0.836
idi-2
Isopentenyl-diphosphate delta-isomerase, type 1; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.835
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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