STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4940PFAM: alpha/beta hydrolase fold; Epoxide hydrolase domain protein; KEGG: stp:Strop_2711 epoxide hydrolase domain protein. (403 aa)    
Predicted Functional Partners:
Sare_4378
PFAM: alpha/beta hydrolase fold; Epoxide hydrolase domain protein; KEGG: stp:Strop_1066 epoxide hydrolase domain protein.
  
  
 
0.911
Sare_4939
PFAM: alpha/beta hydrolase fold; KEGG: stp:Strop_3108 alpha/beta hydrolase fold.
 
     0.798
Sare_4941
Adenosylmethionine--8-amino-7-oxononanoate transaminase; PFAM: aminotransferase class-III; KEGG: ace:Acel_1287 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.672
Sare_4937
KEGG: sco:SCO3824 putative ABC-transporter ATP-binding component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
   
   0.498
Sare_4936
PFAM: ABC-2 type transporter; KEGG: sco:SCO3825 putative ABC-transporter transmembrane component.
       0.492
Sare_4938
PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sen:SACE_1538 NADPH-dependent FMN reductase.
       0.492
Sare_4942
PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bvi:Bcep1808_6267 glucose-methanol-choline oxidoreductase.
       0.448
Sare_4943
PFAM: DGPFAETKE family protein; KEGG: stp:Strop_4218 DGPFAETKE family protein.
 
     0.426
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
   
 
 0.416
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.