STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4958PFAM: MmgE/PrpD family protein; KEGG: stp:Strop_4443 MmgE/PrpD family protein. (464 aa)    
Predicted Functional Partners:
Sare_1956
KEGG: mlo:mlr5882 Phosphoenolpyruvate phosphomutase.
 
  
 0.859
Sare_2284
KEGG: stp:Strop_2136 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.824
Sare_1027
PFAM: MmgE/PrpD family protein; KEGG: stp:Strop_4385 MmgE/PrpD family protein.
  
     0.765
Sare_0511
PFAM: Citrate synthase; KEGG: stp:Strop_0423 citrate (Si)-synthase; Belongs to the citrate synthase family.
  
  
 0.718
Sare_4957
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: stp:Strop_4442 pyridine nucleotide-disulphide oxidoreductase dimerisation region.
       0.662
Sare_4675
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.514
Sare_2921
PFAM: HpcH/HpaI aldolase; KEGG: stp:Strop_1719 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.499
Sare_4955
PFAM: O-methyltransferase family 2; KEGG: sma:SAV2382 O-methyltransferase.
 
     0.468
Sare_0592
KEGG: mjl:Mjls_2559 xenobiotic compound monooxygenase, DszA family, A subunit.
  
    0.418
Sare_2266
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: stp:Strop_2122 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
    0.418
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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