STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4971KEGG: stp:Strop_4458 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Sare_4968
PFAM: type II secretion system protein; KEGG: stp:Strop_4455 type II secretion system protein.
 
     0.959
Sare_4969
PFAM: type II secretion system protein; KEGG: stp:Strop_4456 type II secretion system protein.
 
     0.959
Sare_4972
PFAM: SAF domain protein; KEGG: stp:Strop_4459 SAF domain.
 
    0.959
Sare_4973
KEGG: stp:Strop_4460 hypothetical protein.
 
     0.952
Sare_4966
PFAM: TadE family protein; KEGG: stp:Strop_4453 TadE family protein.
 
     0.905
Sare_4965
PFAM: TadE family protein; KEGG: stp:Strop_4452 TadE family protein.
 
     0.900
Sare_4970
PFAM: type II secretion system protein E; KEGG: stp:Strop_4457 type II secretion system protein E.
 
     0.898
Sare_4964
KEGG: stp:Strop_4450 hypothetical protein.
 
     0.885
Sare_4963
PFAM: Peptidoglycan-binding LysM; KEGG: stp:Strop_4449 peptidoglycan-binding LysM.
 
     0.883
Sare_4974
KEGG: stp:Strop_4461 hypothetical protein.
       0.792
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.