STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4987PFAM: glycosyl transferase family 2; KEGG: stp:Strop_4474 glycosyl transferase, family 2. (235 aa)    
Predicted Functional Partners:
Sare_5019
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: stp:Strop_4509 NAD-dependent epimerase/dehydratase.
 
 
 0.586
Sare_4989
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_4476 histidine kinase A domain protein domain protein.
 
 
   0.518
Sare_4988
KEGG: stp:Strop_4475 hypothetical protein.
       0.513
Sare_2339
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: stp:Strop_2216 NAD-dependent epimerase/dehydratase.
 
 
 0.509
Sare_2759
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sen:SACE_3345 UDP-glucose 4-epimerase.
 
 
 0.505
Sare_3974
PFAM: sugar transferase; KEGG: stp:Strop_3593 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.505
Sare_0520
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_0432 ABC transporter related.
 
  
 0.455
Sare_2173
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rca:Rcas_3656 NAD-dependent epimerase/dehydratase.
 
 
 0.450
Sare_0046
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: stp:Strop_0041 NAD-dependent epimerase/dehydratase.
 
   0.440
Sare_2755
PFAM: glycosyl transferase family 2; KEGG: sen:SACE_3341 glycosyl transferase, family 2.
  
   
0.434
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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