STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_5004PFAM: glycosyl transferase group 1; KEGG: stp:Strop_4490 glycosyl transferase, group 1. (435 aa)    
Predicted Functional Partners:
Sare_0045
TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: stp:Strop_0040 glycosyl transferase, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.
 
 
 0.698
Sare_5006
PFAM: sugar transferase; KEGG: stp:Strop_4492 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.621
Sare_5005
DNA-(apurinic or apyrimidinic site) lyase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; Formamidopyrimidine-DNA glycolase, H2TH DNA binding; KEGG: stp:Strop_4491 DNA-(apurinic or apyrimidinic site) lyase; Belongs to the FPG family.
       0.615
Sare_4787
Adenylate/guanylate cyclase with TPR repeats; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: stp:Strop_4346 adenylyl cyclase class-3/4/guanylyl cyclase.
  
     0.593
Sare_3974
PFAM: sugar transferase; KEGG: stp:Strop_3593 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.550
Sare_0875
PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: stp:Strop_0933 UDP-glucose 6-dehydrogenase.
 
  
 0.467
Sare_3890
KEGG: stp:Strop_3515 hypothetical protein.
  
     0.457
Sare_0283
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: stp:Strop_0242 TrkA-N domain protein.
  
     0.443
Sare_5003
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: stp:Strop_4489 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.438
Sare_3870
KEGG: stp:Strop_3491 hypothetical protein.
  
    0.429
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.