STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_5014RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: stp:Strop_4502 sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)    
Predicted Functional Partners:
Sare_5015
KEGG: stp:Strop_4503 hypothetical protein.
  
    0.814
Sare_0419
KEGG: stp:Strop_0349 hypothetical protein.
   
   0.754
Sare_5095
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: stp:Strop_4577 sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.750
Sare_4666
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nfa:nfa45840 putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.700
Sare_4446
Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70; PFAM: regulatory protein LuxR; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: kra:Krad_1800 RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.678
Sare_4095
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: stp:Strop_3714 sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.676
Sare_5089
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-E type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: stp:Strop_4572 sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.610
Sare_2785
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: stp:Strop_2587 sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.586
Sare_5013
KEGG: stp:Strop_4501 hypothetical protein.
       0.533
Sare_5016
PFAM: flavin reductase domain protein FMN-binding; KEGG: stp:Strop_4506 flavin reductase domain protein, FMN-binding.
       0.531
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.