STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_5073KEGG: stp:Strop_3165 hypothetical protein. (1349 aa)    
Predicted Functional Partners:
Sare_0221
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: ace:Acel_1450 efflux transporter, RND family, MFP subunit.
  
 
 0.886
Sare_4031
PFAM: acriflavin resistance protein; KEGG: stp:Strop_3649 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.851
Sare_1279
KEGG: sco:SCP1.273c putative large secreted protein.
 
  
 0.781
Sare_0218
KEGG: ade:Adeh_3412 secretion protein HlyD.
  
 
 0.757
Sare_0410
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: kra:Krad_1868 efflux transporter, RND family, MFP subunit.
  
 
 0.757
Sare_4443
KEGG: stp:Strop_0465 hypothetical protein.
  
     0.723
Sare_4805
KEGG: sma:SAV6011 regulatory protein.
  
     0.703
Sare_2056
KEGG: sco:SCO5341 SpdA2 protein.
  
     0.663
Sare_2057
KEGG: stp:Strop_1143 hypothetical protein.
  
     0.618
Sare_0783
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: nfa:nfa51400 putative DNA-binding protein.
  
     0.617
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.