STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_5091PFAM: band 7 protein; KEGG: sco:SCO3607 putative secreted protein. (459 aa)    
Predicted Functional Partners:
Sare_5090
KEGG: sco:SCO3608 hypothetical protein.
 
     0.937
Sare_3245
PFAM: protein of unknown function DUF107; KEGG: stp:Strop_3019 protein of unknown function DUF107.
  
  
 0.800
Sare_2559
PFAM: band 7 protein; KEGG: stp:Strop_2410 band 7 protein.
     
 0.672
Sare_3244
PFAM: band 7 protein; KEGG: stp:Strop_3018 band 7 protein.
     
 0.672
Sare_1358
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: stp:Strop_1400 PspA/IM30 family protein.
  
  
 0.547
Sare_3632
KEGG: stp:Strop_3390 hypothetical protein.
  
  
 0.547
Sare_5089
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-E type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: stp:Strop_4572 sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.540
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.