STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_5098TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: stp:Strop_4580 thioredoxin; Belongs to the thioredoxin family. (107 aa)    
Predicted Functional Partners:
Sare_5097
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stp:Strop_4579 thioredoxin reductase.
 
 0.994
Sare_4022
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: stp:Strop_3640 low molecular weight phosphotyrosine protein phosphatase.
  
 
 0.725
Sare_5095
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: stp:Strop_4577 sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.702
Sare_0817
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: stp:Strop_0871 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.628
Sare_3392
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: stp:Strop_3167 ferredoxin-dependent glutamate synthase.
   
 
 0.604
Sare_4121
TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; glutaredoxin 2; KEGG: stp:Strop_3740 glutaredoxin-like protein.
     
 0.602
Sare_5099
PFAM: Peptidoglycan-binding domain 1 protein; cell wall hydrolase/autolysin; KEGG: stp:Strop_4581 cell wall hydrolase/autolysin.
   
 
 0.596
Sare_5094
SMART: serine/threonine protein kinase; KEGG: stp:Strop_4576 serine/threonine protein kinase.
  
    0.569
Sare_0782
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: stp:Strop_0837 pyridine nucleotide-disulphide oxidoreductase dimerisation region.
  
 
 0.568
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.563
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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