STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_0015PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bcn:Bcen_0256 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (280 aa)    
Predicted Functional Partners:
Bphy_0014
PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A4435 putative aminotransferase.
  
  
 0.767
Bphy_0016
PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_A4434 ABC amino acid transporter, periplasmic ligand binding protein; Belongs to the bacterial solute-binding protein 3 family.
       0.661
Bphy_3331
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein barrel; KEGG: bch:Bcen2424_5149 sarcosine oxidase, alpha subunit family; Belongs to the GcvT family.
   
 
 0.434
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
   
 
 0.414
Bphy_0017
Putative transmembrane anti-sigma factor; KEGG: bxe:Bxe_B1670 predicted transmembrane transcriptional regulator (anti-sigma factor).
       0.409
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.