STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_0107High potential iron-sulfur protein; Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria; Belongs to the high-potential iron-sulfur protein (HiPIP) family. (104 aa)    
Predicted Functional Partners:
Bphy_0108
Hypothetical protein.
       0.752
Bphy_0109
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A4332 major facilitator superfamily (MFS) metabolite/H+ symporter.
       0.752
Bphy_1669
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: bxe:Bxe_A2530 transcriptional regulator, Crp/Fnr family.
  
     0.514
Bphy_0106
2-hydroxyglutarate dehydrogenase; PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_A4334 putative FAD dependent oxidoreductase.
       0.455
Bphy_2418
PFAM: DSBA oxidoreductase; KEGG: bxe:Bxe_A3882 putative isomerase.
  
     0.435
Bphy_1519
KEGG: bcn:Bcen_0741 hypothetical protein.
  
     0.402
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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