STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_0159PFAM: regulatory protein AsnC/Lrp family; KEGG: bpd:BURPS668_0348 transcriptional regulator, AsnC family. (161 aa)    
Predicted Functional Partners:
Bphy_2865
PFAM: regulatory protein AsnC/Lrp family; KEGG: bam:Bamb_0241 transcriptional regulator, AsnC family.
  
     0.773
Bphy_3054
PFAM: regulatory protein AsnC/Lrp family; KEGG: bpd:BURPS668_4000 transcriptional regulator, AsnC family.
  
     0.773
Bphy_3860
PFAM: regulatory protein AsnC/Lrp family; KEGG: bxe:Bxe_C0059 transcriptional regulator, AsnC family.
  
     0.766
Bphy_0160
PFAM: protein of unknown function DUF6 transmembrane; KEGG: bch:Bcen2424_2962 protein of unknown function DUF6, transmembrane.
 
     0.723
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.