Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bphy_0366N-acyl-D-amino-acid deacylase; PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: bxe:Bxe_A4058 N-acyl-D-amino-acid deacylase. (495 aa)    
Predicted Functional Partners:
Bphy_0364
KEGG: bxe:Bxe_A4060 putative D-serine deaminase (d-serine dehydratase) protein.
 
   
 0.938
Bphy_0365
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bxe:Bxe_A4059 transcriptional regulator, RpiR family.
 
   
 0.895
Bphy_0367
PFAM: Endoribonuclease L-PSP; KEGG: bxe:Bxe_A4057 putative translation inhibitor, YjgF family.
 
   
 0.847
Bphy_4222
PFAM: peptidase S58 DmpA; KEGG: bxe:Bxe_A0839 aminopeptidase DmpA.
  
     0.401
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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