Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bphy_0803PFAM: branched-chain amino acid transport; KEGG: bxe:Bxe_A1047 hypothetical protein. (107 aa)    
Predicted Functional Partners:
Bphy_0804
PFAM: AzlC family protein; KEGG: bxe:Bxe_A1048 branched chain amino acid exporter, LIV-E family.
 
  
 0.960
Bphy_0457
PFAM: AzlC family protein; KEGG: bxe:Bxe_A0687 branched chain amino acid efflux pump, LivE family.
 
  
 0.614
Bphy_0805
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: bxe:Bxe_A1049 transcriptional regulator, AraC family.
 
     0.578
Bphy_0876
KEGG: bxe:Bxe_A1259 hypothetical protein.
  
     0.533
ycgR
YcgR family protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
     0.520
Bphy_1778
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: bxe:Bxe_A2914 signal transduction protein-like.
  
     0.519
Bphy_0028
PFAM: Patatin; KEGG: bxe:Bxe_A4424 putative patatin-like phospholipase protein.
  
     0.463
Bphy_0148
PFAM: PfkB domain protein; KEGG: bxe:Bxe_A4286 putative carbohydrate kinase.
  
     0.462
Bphy_0467
KEGG: bxe:Bxe_A0697 hypothetical protein.
  
     0.461
Bphy_0806
PFAM: CreA family protein; KEGG: bvi:Bcep1808_1018 CreA family protein.
       0.444
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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