STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_0821PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_0990 Rieske (2Fe-2S) domain protein. (130 aa)    
Predicted Functional Partners:
Bphy_0819
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.806
Bphy_0820
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_A1064 putative haloacid dehalogenase-like hydrolase.
       0.805
Bphy_0822
PFAM: peptidase S49; KEGG: bxe:Bxe_A1066 family S49 unassigned peptidase.
       0.663
Bphy_3909
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMc02016 putative ferredoxin reductase protein.
  
 
 0.607
Bphy_4243
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_B0185 pyridine nucleotide-disulfide oxidoreductase, class I.
  
 
 0.607
Bphy_5415
Rieske (2Fe-2S) domain protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_B1329 putative dioxygenase, ferredoxin reductase component.
  
 
 0.607
Bphy_1281
PFAM: protein of unknown function DUF1289; KEGG: bvi:Bcep1808_1695 protein of unknown function DUF1289.
 
     0.519
Bphy_1348
PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A1671 putative aromatic aminotransferase.
  
     0.476
Bphy_2641
KEGG: bxe:Bxe_A0518 hypothetical protein.
   
   0.451
Bphy_2788
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bxe:Bxe_A0365 glutamate synthase (ferredoxin).
  
  
 0.413
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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