STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_0946KEGG: bxe:Bxe_A2368 putative inner membrane protein. (585 aa)    
Predicted Functional Partners:
Bphy_0945
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bxe:Bxe_A2369 multi antimicrobial extrusion protein MatE family.
 
    0.854
Bphy_3186
PFAM: porin Gram-negative type; KEGG: bur:Bcep18194_B3151 outer membrane protein (porin).
  
     0.766
Bphy_4354
KEGG: bxe:Bxe_B2901 hypothetical protein.
  
     0.766
Bphy_0040
KEGG: bxe:Bxe_A4411 hypothetical protein.
  
     0.764
Bphy_0615
PFAM: Lytic transglycosylase catalytic; KEGG: bxe:Bxe_A0889 putative transglycosylase SLT domain lipoprotein.
 
    0.763
Bphy_3211
PFAM: porin Gram-negative type; KEGG: bvi:Bcep1808_0524 porin, gram-negative type.
  
     0.763
Bphy_3880
PFAM: porin Gram-negative type; KEGG: bxe:Bxe_B0620 outer membrane porin, OmpC family.
  
     0.763
Bphy_3606
PFAM: porin Gram-negative type; KEGG: bxe:Bxe_B1254 outer membrane porin, OmpC family.
  
     0.762
Bphy_2684
PFAM: porin Gram-negative type; KEGG: bxe:Bxe_A0475 outer membrane protein (porin).
  
     0.761
Bphy_4411
KEGG: bxe:Bxe_B2841 putative transmembrane protein.
  
     0.761
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.