STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_1182PFAM: cytochrome B561; KEGG: bxe:Bxe_B2745 putative cytochrome b561. (179 aa)    
Predicted Functional Partners:
Bphy_4184
PFAM: YceI family protein; KEGG: bxe:Bxe_B2065 hypothetical protein; Belongs to the UPF0312 family.
 
  
 0.718
Bphy_2531
PFAM: YceI family protein; KEGG: bxe:Bxe_A3996 hypothetical protein; Belongs to the UPF0312 family.
 
  
 0.678
Bphy_1184
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A2065 putative periplasmic sensor signal transduction histidine kinase, QseC.
 
     0.580
Bphy_4183
PFAM: YceI family protein; KEGG: bxe:Bxe_B2066 hypothetical protein; Belongs to the UPF0312 family.
 
  
 0.531
Bphy_2530
PFAM: YceI family protein; KEGG: bxe:Bxe_A3995 hypothetical protein; Belongs to the UPF0312 family.
 
  
 0.529
Bphy_1183
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bxe:Bxe_A2066 putative QseB, two component transcriptional regulator, winged helix family.
       0.512
Bphy_4161
PFAM: YceI family protein; KEGG: bxe:Bxe_B3019 putative YceI like family protein; Belongs to the UPF0312 family.
 
  
 0.462
Bphy_1181
KEGG: bxe:Bxe_A2067 hypothetical protein.
       0.444
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.