STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_1226TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1987 alpha-ketoglutarate/proton symporter, major facilitator superfamily (MFS). (431 aa)    
Predicted Functional Partners:
rpmE2
PFAM: ribosomal protein L31; KEGG: bxe:Bxe_A2367 ribosomal protein L31.
   
    0.555
Bphy_5415
Rieske (2Fe-2S) domain protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_B1329 putative dioxygenase, ferredoxin reductase component.
   
  
 0.475
Bphy_1227
PFAM: SpoVR family protein; KEGG: bxe:Bxe_A2007 SpoVR-like protein.
       0.412
Bphy_1228
PFAM: protein of unknown function DUF444; KEGG: bxe:Bxe_A2006 protein of unknown function, DUF444; Belongs to the UPF0229 family.
       0.412
Bphy_4906
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro03215 probable aromatic acid transporter, MFS superfamily.
  
     0.412
Bphy_0620
TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: bxe:Bxe_A0894 lumazine-binding protein.
   
    0.402
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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