STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_1776Diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: bxe:Bxe_A2912 putative diguanylate phosphodiesterase (EAL domain). (448 aa)    
Predicted Functional Partners:
Bphy_1777
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: bxe:Bxe_A2913 putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains) with PAS/PAC sensor(s).
 
   
 0.760
Bphy_1744
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: bxe:Bxe_A2834 putative diguanylate phosphodiesterase (EAL domain).
  
   
 0.695
Bphy_3794
KEGG: bxe:Bxe_A3034 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS/PAC and CHASE sensors; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
   
 0.680
Bphy_3700
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: bxe:Bxe_B2035 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
 
   
 0.671
Bphy_0391
KEGG: bxe:Bxe_A4032 putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
   
 0.667
Bphy_0546
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: bxe:Bxe_A0778 putative diguanylate phosphodiesterase (EAL domain).
  
   
 0.654
Bphy_4272
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: pca:Pcar_2558 signal transduction protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
   
 0.629
Bphy_5028
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rso:RS01894 hypothetical protein.
 
   
 0.625
Bphy_3818
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: bxe:Bxe_B0796 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
 
   
 0.609
Bphy_4141
Diguanylate cyclase with PAS/PAC sensor; KEGG: bxe:Bxe_B0009 putative diguanylate cyclase (GGDEF domain); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: PAS domain containing protein.
 
   
 0.602
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.