STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_1794KEGG: bxe:Bxe_A2929 putative lipoprotein. (193 aa)    
Predicted Functional Partners:
Bphy_3196
KEGG: bam:Bamb_1076 outer membrane protein (porin).
  
     0.734
Bphy_0209
PFAM: VanZ family protein; KEGG: bxe:Bxe_A4221 hypothetical protein.
  
     0.727
Bphy_0194
KEGG: bxe:Bxe_A4237 hypothetical protein.
  
     0.724
Bphy_4878
PFAM: porin Gram-negative type; KEGG: reh:H16_B0727 outer membrane protein (porin).
  
     0.719
Bphy_4230
PFAM: porin Gram-negative type; KEGG: bxe:Bxe_B0172 outer membrane porin, OmpC family.
  
     0.716
Bphy_0604
KEGG: bxe:Bxe_A0857 hypothetical protein.
  
     0.686
bamD
Putative competence lipoprotein, ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.685
Bphy_1980
KEGG: bxe:Bxe_A3181 protein of unknown function DUF132.
  
     0.683
Bphy_0161
PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_A4274 putative metallo-beta-lactamase superfamily protein.
  
     0.671
Bphy_0400
PFAM: porin Gram-negative type; KEGG: bxe:Bxe_A4019 outer membrane porin, OmpC family.
  
     0.666
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.