Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_1908Hypothetical protein. (78 aa)    
Predicted Functional Partners:
Bphy_1899
PFAM: metallophosphoesterase; KEGG: pen:PSEEN3165 serine/threonine protein phosphatase.
       0.752
Bphy_1900
GP74; KEGG: bte:BTH_II1036 GP74.
       0.752
Bphy_1901
KEGG: aav:Aave_1600 hypothetical protein.
       0.752
Bphy_1902
KEGG: bxe:Bxe_A3071 hypothetical protein.
       0.752
Bphy_1903
PFAM: protein of unknown function DUF1064; KEGG: bte:BTH_II1034 GP72.
       0.752
Bphy_1904
Hypothetical protein.
       0.752
Bphy_1905
KEGG: bxe:Bxe_A3081 hypothetical protein.
       0.752
Bphy_1906
GP60; KEGG: bte:BTH_II1033 GP60.
       0.752
Bphy_1907
Hypothetical protein.
       0.752
Bphy_1894
KEGG: bur:Bcep18194_B1038 hypothetical protein.
       0.601
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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