Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Bphy_1920KEGG: acb:A1S_1581 methyltransferase putative. (173 aa)    
Predicted Functional Partners:
Bphy_1919
KEGG: bbr:BB2205 hypothetical protein.
     
 0.788
Bphy_1915
KEGG: bvi:Bcep1808_4494 hypothetical protein.
 
     0.776
Bphy_1918
KEGG: eba:ebA23 hypothetical protein.
       0.773
Bphy_1921
Hypothetical protein.
       0.773
Bphy_1922
Hypothetical protein.
       0.752
Bphy_1917
PFAM: C-5 cytosine-specific DNA methylase; KEGG: hch:HCH_02855 site-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.728
Bphy_1916
KEGG: bte:BTH_I0108 hypothetical protein.
       0.666
Bphy_1914
KEGG: aav:Aave_1681 hypothetical protein.
       0.413
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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