Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Bphy_2139 | Bphy_2140 | KEGG: bxe:Bxe_A3353 hypothetical protein. | DNA-cytosine methyltransferase; KEGG: bxe:Bxe_A3354 C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. | 0.411 |
Bphy_2139 | Bphy_2141 | KEGG: bxe:Bxe_A3353 hypothetical protein. | DNA mismatch endonuclease Vsr; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination. | 0.411 |
Bphy_2140 | Bphy_2139 | DNA-cytosine methyltransferase; KEGG: bxe:Bxe_A3354 C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. | KEGG: bxe:Bxe_A3353 hypothetical protein. | 0.411 |
Bphy_2140 | Bphy_2141 | DNA-cytosine methyltransferase; KEGG: bxe:Bxe_A3354 C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. | DNA mismatch endonuclease Vsr; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination. | 0.955 |
Bphy_2141 | Bphy_2139 | DNA mismatch endonuclease Vsr; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination. | KEGG: bxe:Bxe_A3353 hypothetical protein. | 0.411 |
Bphy_2141 | Bphy_2140 | DNA mismatch endonuclease Vsr; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination. | DNA-cytosine methyltransferase; KEGG: bxe:Bxe_A3354 C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase. | 0.955 |