STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_2227PFAM: permease YjgP/YjgQ family protein; KEGG: bxe:Bxe_A3640 membrane protein, YjgP/YjgQ like. (382 aa)    
Predicted Functional Partners:
Bphy_2226
PFAM: permease YjgP/YjgQ family protein; KEGG: bxe:Bxe_A3639 membrane protein, YjgP/YjgQ like.
 
 0.999
Bphy_0327
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A4121 ABC transporter, ATPase subunit.
 
 
 0.988
Bphy_0329
PFAM: protein of unknown function DUF1239; KEGG: bxe:Bxe_A4119 hypothetical protein.
 
 
 0.953
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
  
 0.766
lptD-2
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
  
 0.764
Bphy_2228
PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: bam:Bamb_2518 cobalamin (vitamin B12) biosynthesis CbiX protein.
  
    0.755
Bphy_0946
KEGG: bxe:Bxe_A2368 putative inner membrane protein.
 
     0.659
Bphy_2900
PFAM: Lytic transglycosylase catalytic; KEGG: bxe:Bxe_A0198 transglycosylase.
  
     0.638
Bphy_2224
PFAM: DNA polymerase III chi subunit HolC; KEGG: bxe:Bxe_A3637 putative DNA polymerase III chi subunit.
 
     0.635
Bphy_0040
KEGG: bxe:Bxe_A4411 hypothetical protein.
  
     0.607
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.