STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_2314PFAM: ABC-2 type transporter; KEGG: hch:HCH_10008 ABC-type polysaccharide/polyol phosphate export systems, permease component. (285 aa)    
Predicted Functional Partners:
Bphy_2313
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: net:Neut_0152 ABC transporter-related protein.
 
 0.999
Bphy_2296
PFAM: glycosyl transferase family 2; KEGG: bch:Bcen2424_0878 glycosyl transferase, family 2.
 
  
 0.900
Bphy_3006
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bce:BC1209 O-antigen biosynthesis protein RfbC.
 
  
 0.894
Bphy_2306
PFAM: glycosyl transferase group 1; KEGG: nmu:Nmul_A2403 glycosyl transferase, group 1.
 
  
 0.785
Bphy_2315
Rhamnosyltransferase; KEGG: bch:Bcen2424_0875 rhamnosyltransferase.
 
  
 0.754
Bphy_2309
PFAM: WxcM domain protein; KEGG: gur:Gura_3191 WxcM domain protein, C-terminal domain protein.
     
 0.747
Bphy_2318
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
   
 0.719
Bphy_2319
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bch:Bcen2424_0871 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
   
 0.708
Bphy_2311
PFAM: transferase hexapeptide repeat containing protein; KEGG: cbe:Cbei_2594 hypothetical protein.
     
 0.706
Bphy_2310
KEGG: sit:TM1040_3425 hypothetical protein.
       0.700
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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