STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_3072TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: bxe:Bxe_A4499 putative general secretory pathway protein F. (405 aa)    
Predicted Functional Partners:
Bphy_3071
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.991
Bphy_3070
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: bxe:Bxe_A4501 putative general secretory pathway protein D.
 
  
 0.964
Bphy_2655
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: bxe:Bxe_A0504 type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB.
 
 
 0.961
Bphy_3074
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: bxe:Bxe_A4497 general secretion pathway protein G.
 
  
 0.939
Bphy_2657
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.881
Bphy_3076
TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: bxe:Bxe_A4495 general secretion pathway protein I.
 
  
 0.835
Bphy_2795
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: bxe:Bxe_A0358 putative fimbrial type-4 assembly signal peptide, PilQ-like.
 
 
 
 0.824
Bphy_3075
TIGRFAM: general secretion pathway protein H; KEGG: bxe:Bxe_A4496 general secretion pathway protein H.
 
  
 0.819
Bphy_1443
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: bxe:Bxe_A1569 ComEC/Rec2-related protein.
  
  
 0.767
Bphy_0341
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
    0.632
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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