STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_3183PFAM: class II aldolase/adducin family protein; KEGG: pol:Bpro_0427 class II aldolase/adducin-like. (256 aa)    
Predicted Functional Partners:
Bphy_3184
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pol:Bpro_0422 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
    0.810
Bphy_3182
KEGG: abu:Abu_0882 conserved hypothetical protein.
       0.746
Bphy_3180
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbt:BBta_7628 ABC transporter ATP-binding protein.
       0.619
Bphy_3181
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_3099 binding-protein-dependent transport systems inner membrane component.
       0.618
Bphy_4357
PFAM: HpcH/HpaI aldolase; KEGG: bxe:Bxe_B2899 lyase; Belongs to the HpcH/HpaI aldolase family.
   
    0.583
Bphy_4946
PFAM: HpcH/HpaI aldolase; KEGG: bvi:Bcep1808_5394 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
   
    0.583
Bphy_3185
Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.
       0.551
Bphy_3179
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xau:Xaut_3350 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.520
Bphy_3178
PFAM: CoA-binding domain protein; KEGG: rle:pRL120177 putative pimeloyl-CoA synthetase.
       0.516
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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