Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bphy_3203PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: dac:Daci_4444 oxidoreductase domain protein. (315 aa)    
Predicted Functional Partners:
Bphy_3204
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pat:Patl_3885 protocatechuate 4,5-dioxygenase.
 
  
  0.994
Bphy_3205
TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: dac:Daci_3814 protocatechuate 4,5-dioxygenase, alpha subunit.
 
  
 0.994
Bphy_3206
PFAM: amidohydrolase 2; KEGG: dac:Daci_4447 amidohydrolase 2.
 
  
 0.994
Bphy_3208
PFAM: amidohydrolase 2; KEGG: azo:azo2542 probable 4-oxalomesaconate hydratase.
 
  
 0.907
Bphy_3207
TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: mag:amb0252 4-hydroxy-4-methyl-2-oxoglutarate aldolase.
 
   
 0.902
Bphy_3209
PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453.
 
   
 0.852
Bphy_5192
PFAM: amidohydrolase 2; KEGG: bmn:BMA10247_A1392 amidohydrolase family protein.
 
   
 0.702
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: bxe:Bxe_A1561 lysyl-tRNA synthetase, class-2; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.560
Bphy_3210
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_2034 transcriptional regulator, LysR family.
 
     0.555
Bphy_3006
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bce:BC1209 O-antigen biosynthesis protein RfbC.
  
  
 0.512
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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