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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_3203PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: dac:Daci_4444 oxidoreductase domain protein. (315 aa)    
Predicted Functional Partners:
Bphy_3204
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pat:Patl_3885 protocatechuate 4,5-dioxygenase.
 
  
 0.994
Bphy_3205
TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: dac:Daci_3814 protocatechuate 4,5-dioxygenase, alpha subunit.
 
  
 0.994
Bphy_3206
PFAM: amidohydrolase 2; KEGG: dac:Daci_4447 amidohydrolase 2.
 
  
 0.994
Bphy_3208
PFAM: amidohydrolase 2; KEGG: azo:azo2542 probable 4-oxalomesaconate hydratase.
 
  
 0.908
Bphy_3207
TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: mag:amb0252 4-hydroxy-4-methyl-2-oxoglutarate aldolase.
 
   
 0.905
Bphy_3209
PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453.
 
   
 0.856
Bphy_5192
PFAM: amidohydrolase 2; KEGG: bmn:BMA10247_A1392 amidohydrolase family protein.
 
   
 0.702
Bphy_1601
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bxe:Bxe_A1325 putative myo-inositol catabolism LolD protein; Belongs to the TPP enzyme family.
  
  
 0.673
Bphy_1603
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: bxe:Bxe_A1323 putative myo-inositol catabolism LolB protein.
  
  
 0.660
Bphy_1081
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: bch:Bcen2424_5305 4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.641
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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