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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_3205TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: dac:Daci_3814 protocatechuate 4,5-dioxygenase, alpha subunit. (135 aa)    
Predicted Functional Partners:
Bphy_3204
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pat:Patl_3885 protocatechuate 4,5-dioxygenase.
  
  0.997
Bphy_3206
PFAM: amidohydrolase 2; KEGG: dac:Daci_4447 amidohydrolase 2.
 
  
 0.995
Bphy_3203
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: dac:Daci_4444 oxidoreductase domain protein.
 
  
 0.994
Bphy_3209
PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453.
 
  
 0.981
Bphy_4014
4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding; KEGG: bxe:Bxe_A2040 4-hydroxybenzoate 3-monooxygenase (PobB).
 
 
 0.949
Bphy_4456
4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding; KEGG: bte:BTH_II0045 4-hydroxybenzoate hydroxylase.
 
 
 0.949
Bphy_4880
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: csa:Csal_0343 ferredoxin.
  
  
  0.927
Bphy_3208
PFAM: amidohydrolase 2; KEGG: azo:azo2542 probable 4-oxalomesaconate hydratase.
 
   
 0.924
Bphy_3207
TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: mag:amb0252 4-hydroxy-4-methyl-2-oxoglutarate aldolase.
 
   
 0.922
Bphy_3889
TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: bam:Bamb_3579 protocatechuate 3,4-dioxygenase, beta subunit.
    
 0.907
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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