Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bphy_3209PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453. (369 aa)    
Predicted Functional Partners:
Bphy_3208
PFAM: amidohydrolase 2; KEGG: azo:azo2542 probable 4-oxalomesaconate hydratase.
 
  
 0.994
Bphy_3206
PFAM: amidohydrolase 2; KEGG: dac:Daci_4447 amidohydrolase 2.
 
  
 0.988
Bphy_3205
TIGRFAM: protocatechuate 4,5-dioxygenase, alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: dac:Daci_3814 protocatechuate 4,5-dioxygenase, alpha subunit.
 
  
 0.979
Bphy_3204
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pat:Patl_3885 protocatechuate 4,5-dioxygenase.
 
  
 0.977
Bphy_3207
TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: mag:amb0252 4-hydroxy-4-methyl-2-oxoglutarate aldolase.
 
   
 0.960
Bphy_4352
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
  
 0.912
Bphy_3203
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: dac:Daci_4444 oxidoreductase domain protein.
 
   
 0.852
Bphy_4880
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: csa:Csal_0343 ferredoxin.
  
  
  0.831
Bphy_1543
TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A1419 benzoate-coenzyme A ligase.
  
 
 0.819
Bphy_2688
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A0471 putative enoyl-CoA hydratase I (PaaF); Belongs to the enoyl-CoA hydratase/isomerase family.
   
 
  0.812
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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