Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bphy_3333TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: bvi:Bcep1808_3459 sarcosine oxidase, beta subunit family. (414 aa)    
Predicted Functional Partners:
Bphy_3331
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: FAD dependent oxidoreductase; glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein barrel; KEGG: bch:Bcen2424_5149 sarcosine oxidase, alpha subunit family; Belongs to the GcvT family.
 
 0.997
Bphy_3332
PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: bxe:Bxe_B1599 SoxD.
 
 0.993
Bphy_3330
PFAM: Sarcosine oxidase gamma subunit; KEGG: bam:Bamb_4543 sarcosine oxidase, gamma subunit.
 
 0.992
Bphy_3300
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_B1582 NADH-flavin oxidoreductase / NADH oxidase family protein.
 
 0.971
Bphy_3297
KEGG: bch:Bcen2424_5079 electron transfer flavoprotein beta-subunit.
 
 
  0.948
Bphy_3299
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bte:BTH_II1864 iron-sulfur cluster binding protein.
  
 
  0.941
Bphy_2424
PFAM: aminotransferase class V; KEGG: bcn:Bcen_0344 aminotransferase, class V.
  
 
 0.929
Bphy_4253
Serine--glyoxylate transaminase; PFAM: aminotransferase class V; KEGG: bxe:Bxe_B3001 serine--glyoxylate transaminase.
  
 
 0.929
Bphy_3298
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: bam:Bamb_4492 electron transfer flavoprotein, alpha subunit.
 
 
  0.920
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.909
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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