STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_3493PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: bur:Bcep18194_B1196 transcriptional regulator, TetR family. (211 aa)    
Predicted Functional Partners:
Bphy_3524
PFAM: regulatory protein TetR; KEGG: bxe:Bxe_A1969 transcriptional regulator, TetR family.
  
     0.541
Bphy_3492
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A0708 membrane fusion protein, RND efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.519
Bphy_3491
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bxe:Bxe_A0709 RND family hydrophobe/amphiphile efflux pump.
     
 0.504
Bphy_3490
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bte:BTH_I0682 RND efflux system, outer membrane lipoprotein, NodT family.
     
 0.498
Bphy_3494
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bvi:Bcep1808_4761 two component transcriptional regulator, winged helix family.
       0.422
Bphy_3495
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bvi:Bcep1808_4762 integral membrane sensor signal transduction histidine kinase.
       0.422
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.