STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_3696PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: sde:Sde_3214 hypothetical protein. (296 aa)    
Predicted Functional Partners:
Bphy_3694
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: bxe:Bxe_C1359 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.949
Bphy_2612
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A0549 putative short-chain dehydrogenase/reductase, FabG-like.
 
 0.928
Bphy_4447
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: bbr:BB1998 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.919
Bphy_5385
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: bbr:BB1998 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.918
Bphy_3695
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bvi:Bcep1808_5603 regulatory protein, LacI.
       0.576
Bphy_4442
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bmv:BMASAVP1_1190 putative gluconolactonase.
  
     0.509
Bphy_3693
KEGG: bxe:Bxe_C1358 hypothetical protein.
 
   
 0.492
Bphy_5161
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: atc:AGR_L_1647 possible gluconolactonase precursor.
  
     0.491
Bphy_2618
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: bxe:Bxe_A0543 putative 2-dehydro-3-deoxygalactonate kinase, DgoK-like.
 
   
 0.428
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.