STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_3904PFAM: DoxX family protein; KEGG: bxe:Bxe_B1209 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Bphy_3903
PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: bxe:Bxe_B1210 hypothetical protein; Belongs to the pirin family.
  
  
 0.691
Bphy_4977
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mem:Memar_1561 AAA family ATPase, CDC48 subfamily.
     
 0.607
Bphy_3905
PFAM: porin Gram-negative type; KEGG: bpl:BURPS1106A_0302 outer membrane porin.
  
    0.451
Bphy_3902
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B1211 transcriptional regulator, LysR family.
       0.431
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.