STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_4234PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B0176 putative short chain dehydrogenase. (252 aa)    
Predicted Functional Partners:
Bphy_4233
PFAM: Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_B0175 iron-sulfur cluster-binding protein, rieske family.
 
   
 0.876
Bphy_4235
PFAM: Cupin 2 conserved barrel domain protein; KEGG: bxe:Bxe_B0177 cupin domain protein.
 
     0.815
Bphy_4239
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bxe:Bxe_B0181 putative thiamine pyrophosphate enzyme; Belongs to the TPP enzyme family.
 
 0.723
Bphy_4242
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_B0184 glyoxalase family protein.
 
  
 0.717
Bphy_4231
PFAM: Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_B0173 Rieske (2Fe-2S) region.
 
  
 0.708
Bphy_4236
PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_B0178 hydrolase, alpha/beta fold family.
 
   0.695
Bphy_4238
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B0180 putative short chain dehydrogenase.
 
    
0.679
Bphy_0185
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A4248 putative short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.667
Bphy_4232
KEGG: bxe:Bxe_B0174 hypothetical protein.
       0.659
Bphy_4237
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bxe:Bxe_B0179 transcriptional regulator, IclR family.
 
    0.653
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.