node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bphy_0002 | Bphy_0237 | Bphy_0002 | Bphy_0237 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rpe:RPE_2164 helicase domain protein. | 0.910 |
Bphy_0002 | Bphy_1861 | Bphy_0002 | Bphy_1861 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: bvi:Bcep1808_4568 hypothetical protein. | 0.606 |
Bphy_0002 | Bphy_3658 | Bphy_0002 | Bphy_3658 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: bxe:Bxe_B0929 DNA polymerase II; PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B. | 0.987 |
Bphy_0002 | Bphy_5216 | Bphy_0002 | Bphy_5216 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: metallophosphoesterase; KEGG: bxe:Bxe_B1235 putative exonuclease. | 0.621 |
Bphy_0002 | Bphy_5217 | Bphy_0002 | Bphy_5217 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: bxe:Bxe_B1236 putative GTP-binding protein. | 0.589 |
Bphy_0002 | mutL | Bphy_0002 | Bphy_2485 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.934 |
Bphy_0002 | mutS | Bphy_0002 | Bphy_1399 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.977 |
Bphy_0002 | polA | Bphy_0002 | Bphy_4419 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.995 |
Bphy_0002 | recA | Bphy_0002 | Bphy_0440 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.899 |
Bphy_0237 | Bphy_0002 | Bphy_0237 | Bphy_0002 | PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rpe:RPE_2164 helicase domain protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.910 |
Bphy_0237 | Bphy_1861 | Bphy_0237 | Bphy_1861 | PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rpe:RPE_2164 helicase domain protein. | KEGG: bvi:Bcep1808_4568 hypothetical protein. | 0.838 |
Bphy_0237 | Bphy_3658 | Bphy_0237 | Bphy_3658 | PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rpe:RPE_2164 helicase domain protein. | KEGG: bxe:Bxe_B0929 DNA polymerase II; PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B. | 0.623 |
Bphy_0237 | Bphy_5216 | Bphy_0237 | Bphy_5216 | PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rpe:RPE_2164 helicase domain protein. | PFAM: metallophosphoesterase; KEGG: bxe:Bxe_B1235 putative exonuclease. | 0.627 |
Bphy_0237 | Bphy_5217 | Bphy_0237 | Bphy_5217 | PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rpe:RPE_2164 helicase domain protein. | KEGG: bxe:Bxe_B1236 putative GTP-binding protein. | 0.489 |
Bphy_0237 | polA | Bphy_0237 | Bphy_4419 | PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rpe:RPE_2164 helicase domain protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.955 |
Bphy_0237 | recA | Bphy_0237 | Bphy_0440 | PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rpe:RPE_2164 helicase domain protein. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.828 |
Bphy_1861 | Bphy_0002 | Bphy_1861 | Bphy_0002 | KEGG: bvi:Bcep1808_4568 hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.606 |
Bphy_1861 | Bphy_0237 | Bphy_1861 | Bphy_0237 | KEGG: bvi:Bcep1808_4568 hypothetical protein. | PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: rpe:RPE_2164 helicase domain protein. | 0.838 |
Bphy_1861 | Bphy_3658 | Bphy_1861 | Bphy_3658 | KEGG: bvi:Bcep1808_4568 hypothetical protein. | KEGG: bxe:Bxe_B0929 DNA polymerase II; PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B. | 0.555 |
Bphy_1861 | polA | Bphy_1861 | Bphy_4419 | KEGG: bvi:Bcep1808_4568 hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.937 |