STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_4439Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: bxe:Bxe_B0610 transcriptional regulator, LuxR family. (234 aa)    
Predicted Functional Partners:
Bphy_4437
PFAM: autoinducer synthesis protein; KEGG: bxe:Bxe_B0608 putative autoinducer synthesis protein.
 
 
 0.993
Bphy_0120
PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_A4317 putative metallo-beta-lactamase family protein.
    
 
 0.566
Bphy_0161
PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_A4274 putative metallo-beta-lactamase superfamily protein.
    
 
 0.566
Bphy_5184
KEGG: bvi:Bcep1808_5667 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.564
rpoS
RNA polymerase, sigma 38 subunit, RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
   
  
 0.466
Bphy_2872
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bxe:Bxe_A0280 two component transcriptional regulator, LuxR family.
 
 
 0.434
Bphy_1975
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bxe:Bxe_A3176 two component transcriptional regulator, LuxR family.
 
 
 0.418
Bphy_0355
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bxe:Bxe_A4070 two component transcriptional regulator, LuxR family.
 
 
 0.417
Bphy_5117
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bxe:Bxe_B1813 two component transcriptional regulator, LuxR family.
 
 
 0.410
Bphy_3459
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bma:BMA1034 DNA-binding response regulator.
 
 
 0.403
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.