STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_4506Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: bxe:Bxe_B0758 transcriptional regulator, XRE family with cupin sensor domain. (189 aa)    
Predicted Functional Partners:
Bphy_0416
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bxe:Bxe_A0634 transcriptional regulator, XRE family.
 
  
 0.769
Bphy_4180
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bte:BTH_I1428 DNA-binding protein.
  
  
 0.727
Bphy_4507
Hypothetical protein.
       0.525
Bphy_5184
KEGG: bvi:Bcep1808_5667 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.502
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.487
Bphy_4503
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0755 ABC oligopeptide/dipeptide transporter, inner membrane subunit.
   
   0.464
Bphy_3571
PFAM: peptidase C26; KEGG: bxe:Bxe_B0943 putative glutamine amidotransferase.
 
  
 0.463
Bphy_0717
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: bte:BTH_I1617 glutamine amidotransferase, class I.
 
  
 0.459
Bphy_4505
PFAM: extracellular solute-binding protein family 5; KEGG: bxe:Bxe_B0757 ABC oligopeptide/dipeptide transporter, periplasmic ligand binding protein.
     
 0.456
Bphy_5469
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bur:Bcep18194_B0062 transcriptional regulator, XRE family with cupin sensor domain.
 
  
0.454
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.