STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_4560KEGG: bvi:Bcep1808_6051 hypothetical protein. (160 aa)    
Predicted Functional Partners:
Bphy_4562
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bxe:Bxe_A1409 hypothetical protein.
 
   
 0.943
Bphy_4564
PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bxe:Bxe_A1411 putative thiamine-monophosphate kinase.
 
   
 0.942
Bphy_4561
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bvi:Bcep1808_6052 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
   
 0.940
Bphy_4563
PFAM: GCN5-related N-acetyltransferase; KEGG: bvi:Bcep1808_6054 GCN5-related N-acetyltransferase.
 
   
 0.939
Bphy_4565
PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_A1412 putative glycosyl transferases group 1.
 
   
 0.924
Bphy_4566
KEGG: bxe:Bxe_A1413 hypothetical protein.
 
   
 0.922
Bphy_4567
PFAM: FAD dependent oxidoreductase; KEGG: bxe:Bxe_A1414 hypothetical protein.
 
   
 0.894
Bphy_4568
KEGG: bvi:Bcep1808_6059 hypothetical protein.
 
     0.862
Bphy_5177
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: msm:MSMEG_4138 aliphatic nitrilase.
 
   
 0.793
Bphy_4559
PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bxe:Bxe_A1406 transcriptional regulator, GntR family.
 
     0.660
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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