STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_4719KEGG: bur:Bcep18194_A5987 cupin domain protein. (103 aa)    
Predicted Functional Partners:
Bphy_1057
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bxe:Bxe_A2246 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.492
Bphy_2474
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bxe:Bxe_A3866 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.492
Bphy_3274
PFAM: sugar transferase; KEGG: bur:Bcep18194_C7401 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.492
Bphy_3724
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bxe:Bxe_A3866 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.492
Bphy_4718
KEGG: bxe:Bxe_B2207 hypothetical protein.
       0.463
Bphy_3006
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bce:BC1209 O-antigen biosynthesis protein RfbC.
  
  
 0.459
Bphy_4720
Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: bxe:Bxe_B2205 putative lipoprotein.
       0.454
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.