STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_4927PFAM: glycerate kinase; KEGG: bpl:BURPS1106A_A0173 glycerate kinase; Belongs to the glycerate kinase type-1 family. (395 aa)    
Predicted Functional Partners:
Bphy_1009
PFAM: glycerate kinase; KEGG: bxe:Bxe_A2298 glycerate kinase; Belongs to the glycerate kinase type-1 family.
  
  
 
0.913
Bphy_1286
2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bch:Bcen2424_1953 2-hydroxy-3-oxopropionate reductase.
  
 
 0.911
Bphy_1622
KEGG: bxe:Bxe_A2462 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding.
  
 
 0.908
Bphy_0811
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bxe:Bxe_A1055 putative 2-ketogluconate reductase.
    
 0.907
Bphy_1251
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bxe:Bxe_A1982 putative 2-ketogluconate 6-phosphate reductase, TkrA.
    
 0.907
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
     
 0.905
Bphy_0166
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bxe:Bxe_A4269 putative 2-hydroxyacid dehydrogenase.
    
  0.902
Bphy_2558
PFAM: Phosphoglycerate mutase; KEGG: bxe:Bxe_A0613 putative phosphoglycerate mutase.
     
 0.902
Bphy_3184
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pol:Bpro_0422 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
    
  0.902
Bphy_3885
PFAM: Aldehyde Dehydrogenase; KEGG: bxe:Bxe_B2578 putative aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
 
 0.902
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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